PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G332400.1
Common NamePHAVU_002G332400g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ZF-HD
Protein Properties Length: 158aa    MW: 17206.2 Da    PI: 9.3034
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G332400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer86.72.4e-271058357
         ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                        k +Y+eCl+NhAaslG++a+DGCgEf+ +      + +l+CaACgCHRnFHR+ +
  Phvul.002G332400.1 10 KSVYRECLRNHAASLGSYATDGCGEFTLD------SGGLQCAACGCHRNFHRKVK 58
                        568************************98......679**************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.4E-221257IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.6E-211356IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-171356IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152320.2131357IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466895.61E-1567136IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-2771138IPR009057Homeodomain-like
TIGRFAMsTIGR015652.5E-2878136IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MEGGSGEKWK SVYRECLRNH AASLGSYATD GCGEFTLDSG GLQCAACGCH RNFHRKVKYP  60
VGPESPGAMD YGGEGGSKKR FRSKFSADQK EKMLAFAEKL GWKLQRKDLD DEIERFCRSI  120
GVSRQVFKVW MHNHKNSSSS SSASASASTG NISSLTH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-24771411679ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-175AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160565.11e-114hypothetical protein PHAVU_002G332400g
SwissprotQ9SB615e-42ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLV7CR101e-114V7CR10_PHAVU; Uncharacterized protein
STRINGGLYMA05G33600.17e-75(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79822844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.17e-42homeobox protein 22